By Andreas Gogol-Döring
An Easy-to-Use examine software for set of rules trying out and Development
Before the SeqAn undertaking, there has been essentially a scarcity of accessible implementations in series research, even for normal projects. Implementations of wanted algorithmic parts have been both unavailable or not easy to entry in third-party monolithic software program items. Addressing those issues, the builders of SeqAn created a accomplished, easy-to-use, open resource C++ library of effective algorithms and information constructions for the research of organic sequences. Written by way of the founders of this undertaking, Biological series research utilizing the SeqAn C++ Library covers the SeqAn library, its documentation, and the aiding infrastructure.
The first a part of the ebook describes the final library layout. It introduces organic series research difficulties, discusses the good thing about utilizing software program libraries, summarizes the layout ideas and targets of SeqAn, information the most programming innovations utilized in SeqAn, and demonstrates the applying of those suggestions in a variety of examples. targeting the parts supplied by means of SeqAn, the second one half explores simple performance, series information buildings, alignments, development and motif looking, string indices, and graphs. The final half illustrates functions of SeqAn to genome alignment, consensus series in meeting initiatives, suffix array development, and more.
This convenient e-book describes a trouble-free library of effective information forms and algorithms for series research in computational biology. SeqAn permits not just the implementation of recent algorithms, but in addition the sound research and comparability of latest algorithms.
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